All modules for which code is available
- pygromos.analysis.coordinate_analysis
- pygromos.analysis.energy_analysis
- pygromos.analysis.error_estimate
- pygromos.analysis.free_energy_calculation
- pygromos.data.ff.addAtomType
- pygromos.data.ff.atomType
- pygromos.files.blocks
- pygromos.files.blocks._general_blocks
- pygromos.files.blocks.coord_blocks
- pygromos.files.blocks.imd_blocks
- pygromos.files.blocks.miscBlocks
- pygromos.files.blocks.mtb_blocks
- pygromos.files.blocks.pertubation_blocks
- pygromos.files.blocks.qmmm_blocks
- pygromos.files.blocks.replica_exchange_blocks
- pygromos.files.blocks.topology_blocks
- pygromos.files.coord.cnf
- pygromos.files.coord.posres
- pygromos.files.coord.refpos
- pygromos.files.forcefield.amber.amberff
- pygromos.files.forcefield.gromos.gromosff
- pygromos.files.forcefield.openff.openff
- pygromos.files.forcefield.serenityff.serenityff
- pygromos.files.gromos_system.gromos_system
- pygromos.files.otherfiles.new_repdat
- pygromos.files.otherfiles.noe_output
- pygromos.files.otherfiles.repdat
- pygromos.files.otherfiles.residue_library
- pygromos.files.qmmm.qmmm
- pygromos.files.simulation_parameters.imd
- pygromos.files.topology.disres
- pygromos.files.topology.ifp
- pygromos.files.topology.mtb
- pygromos.files.topology.ptp
- pygromos.files.topology.top
- pygromos.files.trajectory.blocks.energy_trajectory_subblock
- pygromos.files.trajectory.blocks.trajectory_blocks
- pygromos.files.trajectory.trc
- pygromos.files.trajectory.tre
- pygromos.files.trajectory.tre_field_libs.ene_fields
- pygromos.files.trajectory.trg
- pygromos.gromos.compile_gromos
- pygromos.gromos.gromosBashSyntaxParser
- pygromos.gromos.gromosPP
- pygromos.gromos.gromosXX
- pygromos.gromos.pyGromosPP.com_top
- pygromos.gromos.pyGromosPP.ran_box
- pygromos.simulations.approaches.hvap_calculation.hvap_calculation
- pygromos.simulations.hpc_queuing.job_scheduling.file_management
- pygromos.simulations.hpc_queuing.job_scheduling.module_functions
- pygromos.simulations.hpc_queuing.job_scheduling.schedulers.scheduler_functions
- pygromos.simulations.hpc_queuing.job_scheduling.schedulers.simulation_scheduler
- pygromos.simulations.hpc_queuing.job_scheduling.workers.analysis_workers.simulation_analysis
- pygromos.simulations.hpc_queuing.job_scheduling.workers.simulation_workers.clean_up_simulation_files
- pygromos.simulations.hpc_queuing.job_scheduling.workers.simulation_workers.simulation_run_worker
- pygromos.simulations.hpc_queuing.submission_systems
- pygromos.simulations.hpc_queuing.submission_systems.dummy
- pygromos.simulations.hpc_queuing.submission_systems.local
- pygromos.simulations.hpc_queuing.submission_systems.lsf
- pygromos.simulations.hpc_queuing.submission_systems.submission_job
- pygromos.simulations.modules.general_simulation_modules
- pygromos.simulations.modules.preset_simulation_modules
- pygromos.simulations.modules.ti_modules
- pygromos.tests.test_analysis.test_error_estimate
- pygromos.tests.test_analysis.test_freeEnergy
- pygromos.tests.test_approaches.test_solvation_free_ernergy
- pygromos.tests.test_files.general_file_functions
- pygromos.tests.test_files.test_cnf_funcs
- pygromos.tests.test_files.test_disres
- pygromos.tests.test_files.test_disres_file
- pygromos.tests.test_files.test_gromosSystem
- pygromos.tests.test_files.test_gromosSystem_forcefields
- pygromos.tests.test_files.test_imd
- pygromos.tests.test_files.test_imd_block
- pygromos.tests.test_files.test_mtb
- pygromos.tests.test_files.test_ptp
- pygromos.tests.test_files.test_qmmm
- pygromos.tests.test_files.test_repdat
- pygromos.tests.test_files.test_resnlib
- pygromos.tests.test_files.test_top
- pygromos.tests.test_files.test_trajectory
- pygromos.tests.test_pygromos
- pygromos.tests.test_simulation_blocks.test_simulation_runner_blocks
- pygromos.tests.test_submission.test_hpc_queuing_submission_job
- pygromos.tests.test_submission.test_hpc_queuing_submission_scheduling
- pygromos.tests.test_submission.test_hpc_queuing_submission_systems
- pygromos.utils.bash
- pygromos.utils.compiledProgram
- pygromos.utils.pdb
- pygromos.utils.utils
- pygromos.visualization.coordinates_visualization