All modules for which code is available
- __main__
- ensembler.analysis.freeEnergyCalculation
- ensembler.conditions.box_conditions
- ensembler.conditions.restrain_conditions
- ensembler.conditions.thermostats
- ensembler.ensemble._replica_graph
- ensembler.ensemble.exchange_pattern
- ensembler.ensemble.replica_exchange
- ensembler.ensemble.replicas_dynamic_parameters
- ensembler.potentials.ND
- ensembler.potentials.OneD
- ensembler.potentials.TwoD
- ensembler.potentials._basicPotentials
- ensembler.samplers._basicSamplers
- ensembler.samplers.newtonian
- ensembler.samplers.optimizers
- ensembler.samplers.stochastic
- ensembler.system.basic_system
- ensembler.system.eds_system
- ensembler.system.perturbed_system
- ensembler.tests.test_analysis
- ensembler.tests.test_conditions
- ensembler.tests.test_conveyorBelt
- ensembler.tests.test_ensemble
- ensembler.tests.test_ensembler
- ensembler.tests.test_potentials
- ensembler.tests.test_sampler
- ensembler.tests.test_system
- ensembler.tests.test_visualization
- ensembler.util.basic_class
- ensembler.util.ensemblerTypes
- ensembler.visualisation
- ensembler.visualisation.animationSimulation
- ensembler.visualisation.interactive_plots
- ensembler.visualisation.plotConveyorBelt
- ensembler.visualisation.plotPotentials
- ensembler.visualisation.plotSimulations
- pandas.core.frame
- sympy.concrete.summations
- sympy.core.add
- sympy.core.mul
- sympy.core.symbol
- sympy.matrices.dense
- sympy.tensor.array.dense_ndim_array
- sympy.tensor.indexed